API documentation
=================

bam_process
--------------

.. autofunction:: rna_cd.bam_process.chop_contig
.. autofunction:: rna_cd.bam_process.softclip_bases
.. autofunction:: rna_cd.bam_process.coverage
.. autofunction:: rna_cd.bam_process.process_bam
.. autofunction:: rna_cd.bam_process.make_array_set

cli
---
.. automodule:: rna_cd.cli
    :members:

models
------
.. automodule:: rna_cd.models
    :members:

utils
-----
.. automodule:: rna_cd.utils
    :members: